PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13083.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 289aa    MW: 32953.1 Da    PI: 8.2029
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13083.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.64.9e-071560346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT e+ +++  a + + ++   +W ++a++++ g+t  +++  ++ 
       KHN13083.1 15 EWTREDNKKFESALAIYDKDtpdRWFKVAAMIP-GKTVFDVIKQYRE 60
                     7********************************.****999999885 PP

2Myb_DNA-binding42.41.7e-13115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
       KHN13083.1 115 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 159
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5871166IPR017884SANT domain
SMARTSM007173.8E-81264IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-111468IPR009057Homeodomain-like
PfamPF002499.7E-61560IPR001005SANT/Myb domain
CDDcd001676.98E-71561No hitNo description
PROSITE profilePS5129419.353108164IPR017930Myb domain
SuperFamilySSF466892.94E-16110164IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-17111163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-11112158IPR009057Homeodomain-like
SMARTSM007175.6E-11112162IPR001005SANT/Myb domain
PfamPF002495.4E-11115159IPR001005SANT/Myb domain
CDDcd001677.04E-9115159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MPNSNWFVQE SLSTEWTRED NKKFESALAI YDKDTPDRWF KVAAMIPGKT VFDVIKQYRE  60
LEEDVSEIEA GHVPIPGYLA SSFTFELVDN HNYDGCRRRL APVRGSDQER KKGVPWTEEE  120
HRRFLMGLLK YGKGDWRNIS RNFVVTKTPT QVASHAQKYY IRQKVSGGKD KRRPSIHDIT  180
TVNLTETSAS DKNKPPVIAP QQKLNSMSKV QLDWTSSHYN DGSLMVFNPN SDDLFVSSSS  240
DVTSMALKMQ GQDLYECALR EAYAKVKVPG FSMAPRDFNN EAVFGIHAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1616781173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-162AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574483.10.0PREDICTED: MYB transcription factor MYB83 isoform X1
SwissprotQ8S9H75e-92DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B2PZB30.0A0A0B2PZB3_GLYSO; Transcription factor MYB1R1
STRINGGLYMA02G42140.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.18e-92MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]